HL_6OM7_046

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCUGAUCG

Length

10 nucleotides

Bulged bases

6OM7|1|t|U|206

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_046 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3578

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6OM7|1|t|C|199
6OM7|1|t|U|200
6OM7|1|t|U|201
6OM7|1|t|C|202
6OM7|1|t|U|203
6OM7|1|t|G|204
6OM7|1|t|A|205
6OM7|1|t|U|206
6OM7|1|t|C|207
6OM7|1|t|G|208

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Z

60S ribosomal protein L26

Chain f

60S ribosomal protein L32