HL_6P5J_067

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6P5J|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_067 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3211

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5J|1|5|C|1816
6P5J|1|5|U|1817
6P5J|1|5|G|1818
6P5J|1|5|G|1819
6P5J|1|5|U|1820
6P5J|1|5|G|1821
6P5J|1|5|U|1822
6P5J|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AD

uL18

Chain AT

eL21

Chain Ab

eL29