HL_6P5J_098

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6P5J|1|5|A|4214, 6P5J|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_098 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1574

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6P5J|1|5|U|4210
6P5J|1|5|C|4211
6P5J|1|5|A|4212
6P5J|1|5|A|4213
6P5J|1|5|A|4214
6P5J|1|5|C|4215
6P5J|1|5|G|4216
6P5J|1|5|G|4217
6P5J|1|5|U|4218
6P5J|1|5|A|4219
6P5J|1|5|A|4220
6P5J|1|5|C|4221
6P5J|1|5|G|4222

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AI

uL16

Chain AT

eL21

Chain Ab

eL29