HL_6P5K_010

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6P5K|1|2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_010 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.228

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5K|1|2|G|288
6P5K|1|2|G|289
6P5K|1|2|U|290
6P5K|1|2|G|291
6P5K|1|2|A|292
6P5K|1|2|C|293
6P5K|1|2|U|294
6P5K|1|2|C|295

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain M

uS17