3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GACUCAACAC
Length
10 nucleotides
Bulged bases
6P5K|1|2|A|1253
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_030 not in the Motif Atlas
Homologous match to HL_4V88_212
Geometric discrepancy: 0.1274
The information below is about HL_4V88_212
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6P5K|1|2|G|1245
6P5K|1|2|A|1246
6P5K|1|2|C|1247
6P5K|1|2|U|1248
6P5K|1|2|C|1249
6P5K|1|2|A|1250
6P5K|1|2|A|1251
6P5K|1|2|C|1252
6P5K|1|2|A|1253
6P5K|1|2|C|1254

Current chains

Chain 2
18S rRNA

Nearby chains

Chain R
uS9
Chain V
uS10
Chain e
eS29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1412 s