HL_6P5K_031
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 6P5K|1|2|U|1300, 6P5K|1|2|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_031 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2989
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6P5K|1|2|A|1295
6P5K|1|2|U|1296
6P5K|1|2|U|1297
6P5K|1|2|G|1298
6P5K|1|2|A|1299
6P5K|1|2|U|1300
6P5K|1|2|A|1301
6P5K|1|2|G|1302
6P5K|1|2|C|1303
6P5K|1|2|U|1304
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- uS19
- Chain e
- eS29
- Chain g
- eS31
Coloring options: