HL_6P5K_033

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6P5K|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_033 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1484

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5K|1|2|G|1366
6P5K|1|2|U|1367
6P5K|1|2|U|1368
6P5K|1|2|A|1369
6P5K|1|2|A|1370
6P5K|1|2|U|1371
6P5K|1|2|U|1372
6P5K|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17