HL_6P5K_063

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

6P5K|1|5|U|1596, 6P5K|1|5|A|1600, 6P5K|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_063 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0692

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|A|1593
6P5K|1|5|C|1594
6P5K|1|5|G|1595
6P5K|1|5|U|1596
6P5K|1|5|G|1597
6P5K|1|5|C|1598
6P5K|1|5|G|1599
6P5K|1|5|A|1600
6P5K|1|5|A|1601
6P5K|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AP

uL22

Chain Aj

eL37