3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
ACGUGCGAAU
Length
10 nucleotides
Bulged bases
6P5K|1|5|U|1596, 6P5K|1|5|A|1600, 6P5K|1|5|A|1601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_063 not in the Motif Atlas
Homologous match to HL_5TBW_020
Geometric discrepancy: 0.0692
The information below is about HL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.8
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|A|1593
6P5K|1|5|C|1594
6P5K|1|5|G|1595
6P5K|1|5|U|1596
6P5K|1|5|G|1597
6P5K|1|5|C|1598
6P5K|1|5|G|1599
6P5K|1|5|A|1600
6P5K|1|5|A|1601
6P5K|1|5|U|1602

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AB
uL3
Chain AP
uL22
Chain Aj
eL37

Coloring options:


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