HL_6P5K_064

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6P5K|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_064 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1379

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|G|1627
6P5K|1|5|C|1628
6P5K|1|5|G|1629
6P5K|1|5|A|1630
6P5K|1|5|A|1631
6P5K|1|5|A|1632
6P5K|1|5|G|1633
6P5K|1|5|A|1634
6P5K|1|5|C|1635

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain AN

eL15

Chain Aj

eL37