HL_6P5K_092
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGUAACUAUGACU
- Length
- 13 nucleotides
- Bulged bases
- 6P5K|1|5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_092 not in the Motif Atlas
- Geometric match to HL_8P9A_160
- Geometric discrepancy: 0.2039
- The information below is about HL_8P9A_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70658.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6P5K|1|5|A|3756
6P5K|1|5|G|3757
6P5K|1|5|U|3758
6P5K|1|5|A|3759
6P5K|1|5|A|3760
6P5K|1|5|C|3761
6P5K|1|5|U|3762
6P5K|1|5|A|3763
6P5K|1|5|U|3764
6P5K|1|5|G|3765
6P5K|1|5|A|3766
6P5K|1|5|C|3767
6P5K|1|5|U|3768
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: