HL_6P5K_099
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6P5K|1|5|A|4214, 6P5K|1|5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_099 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1542
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6P5K|1|5|U|4210
6P5K|1|5|C|4211
6P5K|1|5|A|4212
6P5K|1|5|A|4213
6P5K|1|5|A|4214
6P5K|1|5|C|4215
6P5K|1|5|G|4216
6P5K|1|5|G|4217
6P5K|1|5|U|4218
6P5K|1|5|A|4219
6P5K|1|5|A|4220
6P5K|1|5|C|4221
6P5K|1|5|G|4222
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AI
- uL16
- Chain AT
- eL21
- Chain Ab
- eL29
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