HL_6Q95_017
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 6Q95|1|1|C|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_017 not in the Motif Atlas
- Homologous match to HL_7RQB_018
- Geometric discrepancy: 0.1487
- The information below is about HL_7RQB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41998.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 69
Unit IDs
6Q95|1|1|U|566
6Q95|1|1|A|567
6Q95|1|1|U|568
6Q95|1|1|U|569
6Q95|1|1|G|570
6Q95|1|1|A|571
6Q95|1|1|A|572
6Q95|1|1|G|573
6Q95|1|1|C|574
6Q95|1|1|A|575
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L21
- Chain b
- 50S ribosomal protein L32
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