HL_6Q95_020

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6Q95|1|1|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_020 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.292

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6Q95|1|1|C|641
6Q95|1|1|G|642
6Q95|1|1|A|643
6Q95|1|1|A|644
6Q95|1|1|C|645
6Q95|1|1|A|646
6Q95|1|1|G|647

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35