HL_6Q97_028
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAGCGUAAUAGCUC
- Length
- 16 nucleotides
- Bulged bases
- 6Q97|1|1|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_028 not in the Motif Atlas
- Homologous match to HL_5J7L_162
- Geometric discrepancy: 0.486
- The information below is about HL_5J7L_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_04775.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q97|1|1|G|1087
6Q97|1|1|A|1088
6Q97|1|1|A|1089
6Q97|1|1|A|1090
6Q97|1|1|G|1091
6Q97|1|1|C|1092
6Q97|1|1|G|1093
6Q97|1|1|U|1094
6Q97|1|1|A|1095
6Q97|1|1|A|1096
6Q97|1|1|U|1097
6Q97|1|1|A|1098
6Q97|1|1|G|1099
6Q97|1|1|C|1100
6Q97|1|1|U|1101
6Q97|1|1|C|1102
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain H
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain f
- 50S ribosomal protein L36
Coloring options: