HL_6Q97_096
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_096 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.2401
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6Q97|1|2|C|1314
6Q97|1|2|U|1315
6Q97|1|2|G|1316
6Q97|1|2|C|1317
6Q97|1|2|A|1318
6Q97|1|2|A|1319
6Q97|1|2|C|1320
6Q97|1|2|U|1321
6Q97|1|2|C|1322
6Q97|1|2|G|1323
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14
- Chain x
- 30S ribosomal protein S19
Coloring options: