HL_6QDW_014

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6QDW|1|b|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_014 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1286

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6QDW|1|b|A|382
6QDW|1|b|C|383
6QDW|1|b|A|384
6QDW|1|b|C|385
6QDW|1|b|G|386
6QDW|1|b|U|387
6QDW|1|b|G|388
6QDW|1|b|G|389
6QDW|1|b|U|390
6QDW|1|b|A|391
6QDW|1|b|U|392

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28