HL_6QDW_042

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6QDW|1|b|A|1636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_042 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0808

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6QDW|1|b|A|1632
6QDW|1|b|G|1633
6QDW|1|b|A|1634
6QDW|1|b|G|1635
6QDW|1|b|A|1636
6QDW|1|b|A|1637
6QDW|1|b|U|1638

Current chains

Chain b

23S rRNA

Nearby chains