HL_6QNR_244

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

6QNR|1|1G|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNR_244 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.2988

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6QNR|1|1G|C|1264
6QNR|1|1G|G|1265
6QNR|1|1G|G|1266
6QNR|1|1G|C|1267
6QNR|1|1G|A|1268
6QNR|1|1G|A|1269
6QNR|1|1G|C|1270
6QNR|1|1G|G|1271

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 4A

30S ribosomal protein S13

Chain AA

30S ribosomal protein S19