HL_6QT0_023

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

6QT0|1|A|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_023 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3615

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6QT0|1|A|U|1022
6QT0|1|A|C|1023
6QT0|1|A|G|1024
6QT0|1|A|A|1025
6QT0|1|A|A|1026
6QT0|1|A|A|1027
6QT0|1|A|U|1028
6QT0|1|A|G|1029
6QT0|1|A|A|1030

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L11-A