HL_6QT0_024

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6QT0|1|A|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1777

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6QT0|1|A|C|1076
6QT0|1|A|U|1077
6QT0|1|A|U|1078
6QT0|1|A|A|1079
6QT0|1|A|A|1080
6QT0|1|A|U|1081
6QT0|1|A|U|1082
6QT0|1|A|G|1083

Current chains

Chain A

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L29