HL_6QT0_044

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGGGUACGAU

Length

12 nucleotides

Bulged bases

6QT0|1|A|G|1952, 6QT0|1|A|G|1954, 6QT0|1|A|U|1955

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_044 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3993

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6QT0|1|A|G|1949
6QT0|1|A|U|1950
6QT0|1|A|C|1951
6QT0|1|A|G|1952
6QT0|1|A|G|1953
6QT0|1|A|G|1954
6QT0|1|A|U|1955
6QT0|1|A|A|2093
6QT0|1|A|C|2094
6QT0|1|A|G|2095
6QT0|1|A|A|2096
6QT0|1|A|U|2097

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A