HL_6QTZ_028

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QTZ_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3374

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6QTZ|1|A|U|1267
6QTZ|1|A|G|1268
6QTZ|1|A|U|1269
6QTZ|1|A|A|1270
6QTZ|1|A|A|1271
6QTZ|1|A|C|1272
6QTZ|1|A|A|1273
6QTZ|1|A|A|1274

Current chains

Chain A

25S rRNA

Nearby chains

Chain t

Ubiquitin-60S ribosomal protein L40