HL_6QTZ_055

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6QTZ|1|A|A|2637, 6QTZ|1|A|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QTZ_055 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1094

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6QTZ|1|A|U|2633
6QTZ|1|A|U|2634
6QTZ|1|A|A|2635
6QTZ|1|A|A|2636
6QTZ|1|A|A|2637
6QTZ|1|A|C|2638
6QTZ|1|A|G|2639
6QTZ|1|A|A|2640
6QTZ|1|A|U|2641
6QTZ|1|A|A|2642
6QTZ|1|A|A|2643
6QTZ|1|A|C|2644
6QTZ|1|A|G|2645

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L29

Chain q

60S ribosomal protein L10