HL_6RBE_019

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6RBE|1|2|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBE_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3642

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6RBE|1|2|A|829
6RBE|1|2|U|830
6RBE|1|2|U|831
6RBE|1|2|U|832
6RBE|1|2|U|833
6RBE|1|2|G|834
6RBE|1|2|U|835
6RBE|1|2|U|836
6RBE|1|2|G|837
6RBE|1|2|G|838
6RBE|1|2|U|839
6RBE|1|2|U|840
6RBE|1|2|U|841
6RBE|1|2|C|842
6RBE|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S11-A