HL_6RBE_026

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6RBE|1|2|U|1191, 6RBE|1|2|C|1195, 6RBE|1|2|A|1196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBE_026 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.2827

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6RBE|1|2|G|1188
6RBE|1|2|A|1189
6RBE|1|2|C|1190
6RBE|1|2|U|1191
6RBE|1|2|C|1192
6RBE|1|2|A|1193
6RBE|1|2|A|1194
6RBE|1|2|C|1195
6RBE|1|2|A|1196
6RBE|1|2|C|1197

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29-A