HL_6RBE_027

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6RBE|1|2|G|1243, 6RBE|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBE_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3163

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6RBE|1|2|A|1238
6RBE|1|2|U|1239
6RBE|1|2|U|1240
6RBE|1|2|G|1241
6RBE|1|2|A|1242
6RBE|1|2|G|1243
6RBE|1|2|A|1244
6RBE|1|2|G|1245
6RBE|1|2|C|1246
6RBE|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29-A

Chain f

Ubiquitin-40S ribosomal protein S31