HL_6S05_015
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 6S05|1|A|U|689, 6S05|1|A|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S05_015 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.1532
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6S05|1|A|G|686
6S05|1|A|U|687
6S05|1|A|G|688
6S05|1|A|U|689
6S05|1|A|A|690
6S05|1|A|A|691
6S05|1|A|A|692
6S05|1|A|A|693
6S05|1|A|C|694
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L13-A
- Chain O
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L26-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
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