HL_6S05_054

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6S05|1|A|A|2637, 6S05|1|A|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S05_054 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1519

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6S05|1|A|U|2633
6S05|1|A|U|2634
6S05|1|A|A|2635
6S05|1|A|A|2636
6S05|1|A|A|2637
6S05|1|A|C|2638
6S05|1|A|G|2639
6S05|1|A|A|2640
6S05|1|A|U|2641
6S05|1|A|A|2642
6S05|1|A|A|2643
6S05|1|A|C|2644
6S05|1|A|G|2645

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L29