3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GUUUAUCAAAAAC
Length
13 nucleotides
Bulged bases
6S13|1|A|A|1807, 6S13|1|A|U|1808, 6S13|1|A|C|1809, 6S13|1|A|A|1813
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6S13_043 not in the Motif Atlas
Homologous match to HL_7A0S_045
Geometric discrepancy: 0.1885
The information below is about HL_7A0S_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_60266.1
Basepair signature
cWW-cWW-tWH-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6S13|1|A|G|1803
6S13|1|A|U|1804
6S13|1|A|U|1805
6S13|1|A|U|1806
6S13|1|A|A|1807
6S13|1|A|U|1808
6S13|1|A|C|1809
6S13|1|A|A|1810
6S13|1|A|A|1811
6S13|1|A|A|1812
6S13|1|A|A|1813
6S13|1|A|A|1814
6S13|1|A|C|1815

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L2

Coloring options:


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