HL_6SGC_014
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 6SGC|1|54|G|294, 6SGC|1|54|A|295, 6SGC|1|54|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_014 not in the Motif Atlas
- Homologous match to HL_5TBW_008
- Geometric discrepancy: 0.1
- The information below is about HL_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6SGC|1|54|C|289
6SGC|1|54|U|290
6SGC|1|54|U|291
6SGC|1|54|G|292
6SGC|1|54|G|293
6SGC|1|54|G|294
6SGC|1|54|A|295
6SGC|1|54|A|296
6SGC|1|54|U|297
6SGC|1|54|G|298
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain Q2
- eL18
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain o2
- eL42
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