HL_6SGC_027
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACGUGCGAAU
- Length
- 10 nucleotides
- Bulged bases
- 6SGC|1|54|U|1596, 6SGC|1|54|A|1600, 6SGC|1|54|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_027 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.0826
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6SGC|1|54|A|1593
6SGC|1|54|C|1594
6SGC|1|54|G|1595
6SGC|1|54|U|1596
6SGC|1|54|G|1597
6SGC|1|54|C|1598
6SGC|1|54|G|1599
6SGC|1|54|A|1600
6SGC|1|54|A|1601
6SGC|1|54|U|1602
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain B2
- uL3
- Chain P2
- uL22
- Chain XX
- poly-lysine nascent chain
- Chain j2
- Ribosomal protein L37
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