HL_6SGC_054
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6SGC|1|54|A|3642, 6SGC|1|54|A|3643, 6SGC|1|54|U|3644, 6SGC|1|54|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_054 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1595
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6SGC|1|54|U|3639
6SGC|1|54|U|3640
6SGC|1|54|U|3641
6SGC|1|54|A|3642
6SGC|1|54|A|3643
6SGC|1|54|U|3644
6SGC|1|54|U|3645
6SGC|1|54|A|3646
6SGC|1|54|A|3647
6SGC|1|54|A|3648
6SGC|1|54|A|3649
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain A2
- Ribosomal protein L8
- Chain XX
- poly-lysine nascent chain
- Chain j2
- Ribosomal protein L37
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