HL_6SGC_064

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6SGC|1|54|A|4214, 6SGC|1|54|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_064 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1335

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6SGC|1|54|U|4210
6SGC|1|54|C|4211
6SGC|1|54|A|4212
6SGC|1|54|A|4213
6SGC|1|54|A|4214
6SGC|1|54|C|4215
6SGC|1|54|G|4216
6SGC|1|54|G|4217
6SGC|1|54|U|4218
6SGC|1|54|A|4219
6SGC|1|54|A|4220
6SGC|1|54|C|4221
6SGC|1|54|G|4222

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain I2

60S ribosomal protein L10

Chain T2

eL21

Chain b2

eL29