HL_6SGC_111
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6SGC|1|A1|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_111 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.1078
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|G|1245
6SGC|1|A1|A|1246
6SGC|1|A1|C|1247
6SGC|1|A1|U|1248
6SGC|1|A1|C|1249
6SGC|1|A1|A|1250
6SGC|1|A1|A|1251
6SGC|1|A1|C|1252
6SGC|1|A1|A|1253
6SGC|1|A1|C|1254
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain Q1
- uS19
- Chain R1
- Ribosomal protein S16
- Chain V1
- Ribosomal_S10 domain-containing protein
- Chain e1
- uS14
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