HL_6SGC_112

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6SGC|1|A1|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_112 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2455

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SGC|1|A1|A|1295
6SGC|1|A1|U|1296
6SGC|1|A1|U|1297
6SGC|1|A1|G|1298
6SGC|1|A1|A|1299
6SGC|1|A1|U|1300
6SGC|1|A1|A|1301
6SGC|1|A1|G|1302
6SGC|1|A1|C|1303
6SGC|1|A1|U|1304

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Q1

uS19

Chain e1

uS14

Chain g1

Ribosomal protein S27a