HL_6SKF_075

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(5MU)UUAGUAAAAAC

Length

13 nucleotides

Bulged bases

6SKF|1|BA|A|1908, 6SKF|1|BA|G|1909, 6SKF|1|BA|U|1910, 6SKF|1|BA|A|1914

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_075 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.179

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|G|1904
6SKF|1|BA|5MU|1905
6SKF|1|BA|U|1906
6SKF|1|BA|U|1907
6SKF|1|BA|A|1908
6SKF|1|BA|G|1909
6SKF|1|BA|U|1910
6SKF|1|BA|A|1911
6SKF|1|BA|A|1912
6SKF|1|BA|A|1913
6SKF|1|BA|A|1914
6SKF|1|BA|A|1915
6SKF|1|BA|C|1916

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Bh

50S ribosomal protein L37e