HL_6SPF_012

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GCACGAGAAAC

Length

11 nucleotides

Bulged bases

6SPF|1|A|G|377, 6SPF|1|A|A|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1877

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SPF|1|A|G|373
6SPF|1|A|C|374
6SPF|1|A|A|375
6SPF|1|A|C|376
6SPF|1|A|G|377
6SPF|1|A|A|378
6SPF|1|A|G|379
6SPF|1|A|A|380
6SPF|1|A|A|381
6SPF|1|A|A|382
6SPF|1|A|C|383

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28