HL_6SPF_109

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6SPF|1|a|G|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_109 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.2973

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SPF|1|a|G|1083
6SPF|1|a|U|1084
6SPF|1|a|U|1085
6SPF|1|a|A|1086
6SPF|1|a|A|1087
6SPF|1|a|G|1088
6SPF|1|a|U|1089
6SPF|1|a|C|1090

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7