HL_6SPG_036

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GCGUUGGUUGUC

Length

12 nucleotides

Bulged bases

6SPG|1|A|U|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_036 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3415

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6SPG|1|A|G|1437
6SPG|1|A|C|1438
6SPG|1|A|G|1439
6SPG|1|A|U|1440
6SPG|1|A|U|1441
6SPG|1|A|G|1442
6SPG|1|A|G|1443
6SPG|1|A|U|1444
6SPG|1|A|U|1445
6SPG|1|A|G|1446
6SPG|1|A|U|1447
6SPG|1|A|C|1448

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17