HL_6SV4_029

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6SV4|1|2|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_029 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1816

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SV4|1|2|C|1309
6SV4|1|2|U|1310
6SV4|1|2|U|1311
6SV4|1|2|A|1312
6SV4|1|2|A|1313
6SV4|1|2|U|1314
6SV4|1|2|U|1315
6SV4|1|2|G|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S17-B