HL_6SV4_042

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6SV4|1|2b|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_042 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.1237

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SV4|1|2b|G|243
6SV4|1|2b|A|244
6SV4|1|2b|U|245
6SV4|1|2b|G|246
6SV4|1|2b|A|247
6SV4|1|2b|U|248
6SV4|1|2b|U|249
6SV4|1|2b|C|250

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Xb

40S ribosomal protein S11-A