HL_6SV4_044
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|2b|G|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_044 not in the Motif Atlas
- Geometric match to HL_4V88_193
- Geometric discrepancy: 0.1785
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6SV4|1|2b|G|330
6SV4|1|2b|A|331
6SV4|1|2b|U|332
6SV4|1|2b|A|333
6SV4|1|2b|G|334
6SV4|1|2b|U|335
6SV4|1|2b|G|336
6SV4|1|2b|G|337
6SV4|1|2b|C|338
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Vb
- 40S ribosomal protein S8-A
- Chain Xb
- 40S ribosomal protein S11-A
Coloring options: