HL_6SV4_056

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_056 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.2175

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SV4|1|2b|A|829
6SV4|1|2b|U|830
6SV4|1|2b|U|831
6SV4|1|2b|U|832
6SV4|1|2b|U|833
6SV4|1|2b|G|834
6SV4|1|2b|U|835
6SV4|1|2b|U|836
6SV4|1|2b|G|837
6SV4|1|2b|G|838
6SV4|1|2b|U|839
6SV4|1|2b|U|840
6SV4|1|2b|U|841
6SV4|1|2b|C|842
6SV4|1|2b|U|843

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Xb

40S ribosomal protein S11-A