HL_6SV4_059
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6SV4|1|2b|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_059 not in the Motif Atlas
- Geometric match to HL_4LFB_017
- Geometric discrepancy: 0.2053
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6SV4|1|2b|G|997
6SV4|1|2b|A|998
6SV4|1|2b|U|999
6SV4|1|2b|C|1000
6SV4|1|2b|A|1001
6SV4|1|2b|G|1002
6SV4|1|2b|A|1003
6SV4|1|2b|U|1004
6SV4|1|2b|A|1005
6SV4|1|2b|C|1006
6SV4|1|2b|C|1007
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Zb
- 40S ribosomal protein S14-A
- Chain eb
- 40S ribosomal protein S26-A
- Chain mb
- Transfer RNA; tRNA
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