HL_6SV4_130
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 6SV4|1|BQ|U|879, 6SV4|1|BQ|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_130 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.2236
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6SV4|1|BQ|A|876
6SV4|1|BQ|C|877
6SV4|1|BQ|G|878
6SV4|1|BQ|U|879
6SV4|1|BQ|G|880
6SV4|1|BQ|C|881
6SV4|1|BQ|A|882
6SV4|1|BQ|A|883
6SV4|1|BQ|A|884
6SV4|1|BQ|U|885
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BA
- 60S ribosomal protein L3
- Chain BE
- 60S ribosomal protein L4-A
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