HL_6SV4_134

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6SV4|1|BQ|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_134 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1423

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SV4|1|BQ|C|1076
6SV4|1|BQ|U|1077
6SV4|1|BQ|U|1078
6SV4|1|BQ|A|1079
6SV4|1|BQ|A|1080
6SV4|1|BQ|U|1081
6SV4|1|BQ|U|1082
6SV4|1|BQ|G|1083

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A