HL_6SV4_156

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6SV4|1|BQ|A|2138, 6SV4|1|BQ|A|2139, 6SV4|1|BQ|U|2140, 6SV4|1|BQ|A|2144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_156 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.2058

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6SV4|1|BQ|U|2135
6SV4|1|BQ|C|2136
6SV4|1|BQ|U|2137
6SV4|1|BQ|A|2138
6SV4|1|BQ|A|2139
6SV4|1|BQ|U|2140
6SV4|1|BQ|U|2141
6SV4|1|BQ|A|2142
6SV4|1|BQ|A|2143
6SV4|1|BQ|A|2144
6SV4|1|BQ|A|2145

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AW

60S ribosomal protein L2-A

Chain AX

60S ribosomal protein L17-A