HL_6SV4_166

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6SV4|1|BQ|A|2637, 6SV4|1|BQ|C|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_166 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.0964

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6SV4|1|BQ|U|2633
6SV4|1|BQ|U|2634
6SV4|1|BQ|A|2635
6SV4|1|BQ|A|2636
6SV4|1|BQ|A|2637
6SV4|1|BQ|C|2638
6SV4|1|BQ|G|2639
6SV4|1|BQ|A|2640
6SV4|1|BQ|U|2641
6SV4|1|BQ|A|2642
6SV4|1|BQ|A|2643
6SV4|1|BQ|C|2644
6SV4|1|BQ|G|2645

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BD

60S ribosomal protein L10

Chain BJ

60S ribosomal protein L21-A