HL_6T59_057

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6T59|1|54|U|3802

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_057 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1187

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6T59|1|54|U|3796
6T59|1|54|C|3797
6T59|1|54|U|3798
6T59|1|54|A|3799
6T59|1|54|A|3800
6T59|1|54|U|3801
6T59|1|54|U|3802
6T59|1|54|A|3803
6T59|1|54|G|3804

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain V3

Ribosomal protein L23