HL_6T59_087

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6T59|1|54|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_087 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.4845

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T59|1|54|G|3757
6T59|1|54|U|3758
6T59|1|54|A|3759
6T59|1|54|A|3760
6T59|1|54|C|3761
6T59|1|54|U|3762
6T59|1|54|A|3763
6T59|1|54|U|3764
6T59|1|54|G|3765
6T59|1|54|A|3766
6T59|1|54|C|3767

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA